I have an MSI laptop and MSI motherboard in a PC. Didn't have any specific compatibility issues, and I'm running Linux on both. You can update the BIOS with an usb stick straight from the BIOS. There's not really anything that 100% requires Windows.
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Get started with a Linux server and then I'd go with something like Nextcloud in a Docker container. Then do reverse proxy, nginx on the host is very easy. You can get and update SSL certs with certbot (Let's Encrypt).