Countries are not just lines on a map. They are people. Calling for their destruction is calling for the death of those people and their culture.
You cannot decide after saying it that calling for the "destruction" of a country means merely changing the borders or system of government. The word implies violence.
So by your logic calling for the destruction of Gaza or Palestine should be allowed as non-hate speech as well. Because it's only referring to "the dissolution of a state apparatus".
Based on your comments elsewhere, you'd automatically color those as the calls to violence they quite clearly are, yet you're willing to go to great length to argue that somehow calling for the destruction of Israel isn't.